M23_module

rq turtle/ttl

• protein classification
• GO annotation

protein, GO-term and superClass

Use at

• https://sparql.uniprot.org/sparql/

PREFIX up: <http://purl.uniprot.org/core/>
  PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
SELECT ?protein ?goTerm ?superGO
WHERE {
        ?protein up:classifiedWith ?goTerm.
        ?goTerm rdfs:subClassOf ?superGO.
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v2("?goTerm"):::projected 
  v1("?protein"):::projected 
  v3("?superGO"):::projected 
  v1 --"up:classifiedWith"-->  v2
  v2 --"rdfs:subClassOf"-->  v3