M47_module

rq turtle/ttl

• catalyzed reaction
• catalytic activity

annotation and catalyzed reaction to compound +chebi

Use at

• https://sparql.uniprot.org/sparql/

PREFIX up: <http://purl.uniprot.org/core/>
PREFIX rh: <http://rdf.rhea-db.org/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
SELECT ?reaction ?compound ?protein ?annotation ?ca
WHERE {
        ?protein up:annotation ?annotation.
        ?annotation up:catalyticActivity ?ca.
        ?ca up:catalyzedReaction ?reaction.
        ?reaction rdfs:subClassOf rh:Reaction.
        ?reaction rh:side ?side.
        ?side rh:contains ?participant.
        ?participant rh:compound ?compound.
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v2("?annotation"):::projected 
  v3("?ca"):::projected 
  v7("?compound"):::projected 
  v6("?participant")
  v1("?protein"):::projected 
  v4("?reaction"):::projected 
  v5("?side")
  c5(["rh:Reaction"]):::iri 
  v1 --"up:annotation"-->  v2
  v2 --"up:catalyticActivity"-->  v3
  v3 --"up:catalyzedReaction"-->  v4
  v4 --"rdfs:subClassOf"-->  c5
  v4 --"rh:side"-->  v5
  v5 --"rh:contains"-->  v6
  v6 --"rh:compound"-->  v7